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Report for Sequence Feature Glyma18g41886

Feature Type:gene_model
Chromosome:Gm18
Start:50893552
stop:50899663
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g41886
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01050AT Annotation by Michelle Graham. TAIR10: Laccase/Diphenol oxidase family protein | chr5:18209-20812 REVERSE LENGTH=586 SoyBaseE_val: 0ISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0052716GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF9Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_B9HC76UniRef Annotation by Michelle Graham. Most informative UniRef hit: Laccase 110a n=1 Tax=Populus trichocarpa RepID=B9HC76_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F11DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F11D related cluster n=1 Tax=unknown RepID=UPI000233F11D SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g41886
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g41886 not represented in the dataset
Glyma18g41886 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41886
ParalogEvidenceComments
Glyma07g17170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41886 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g193400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g41886
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g41886
>Glyma18g41886.1   sequence type=CDS   gene model=Glyma18g41886   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTTTCCGTGTTCTGGTTTGCATGGGCTTTTGCTCTTCTAGTTTCCATGGCTTCTGCTGCTACAGTAGAACACACTTTCATTGTTCAAAACAAGGCTGTCACACGCTTGTGCAAAGAGCGAGTGATTGTCACAGTTAATGGACTTTATCCTGGACCAAGGATAGATGTCAGAGAAGGGGACGCTGTGATTGTTCACGTAATCAACAAGTCACCCTACAATATCACTATTCATTGGCATGGAGTATTCCAGCTCTTTAGTGCATGGGCAGATGGTCCTGAATATATAACCCAATGCAATATTCGTCCCCAAAAGAGTTACACTTATAAATTCAATGTGATACAACAAGAAGGGACATTGTGGTGGCATGCACACTCAGGAGTTTTACGTGCCACGGTTCATGGTGCTTTTATCATTCACCCTCGTTCGGGTCTGTTTCCTTTTCCTAAACCCTACAAGCAAGTACCAATAATATTAGGTGATTGGTATGACGGTAATGTTGTGGATATTTATCAGCAAGTACTGCTTCTCGGGGATGTAAGACCATCTGCTGCCTACACCATCAATGGTTTGCCTGGTGATCTCTACAATTGCTCTAGAAATCAGATGTTCAAGCTAAAGGTAAGGCCAGGGAAGACCTACTTGCTAAGAATGATCAACGCTGCATTCAATAATAACCTTTTCGTCAAGATAGCCAACCACAGCTTCACAGTCGTTGCCATGGACGCTTCCTACATCGAACCCTATGCAACCGACATCATCACCATTGCCCCTGGCCAAAGTGCTGACGTGCTCTTCAAAGCCAACCAACCCATAGGCTCATATTACATGGCAGCCTCTCCTTACGTTGTGGGCCAGCCAGAAGTGCTATTCGACACCACGACAACTCGCGGCATTGTCGTTTACGAAGGCTACAAGACATCATCAAAAAATTATTCAAAGCCCATTGTGCCAATACTCCCACACTTCAACGACACCCCAATTGCTCACAAATTTTTTAGCAACATCACGAGCTTGATGGGGGCCCCACATTGGGTCCCGGTCCCACTTGAGGTGGATGAGCACATGTTCATCACCATTAACATAAACCTTGAAAGGTGTCCCAAGAATGGCACGTGTCAAGGTGTGTTTGGACAGAAATTCTCCGCAAGCATGAACAACGAATCATTTGTGCACCCCGTTGGAAAAGGATACTCTATGTTGGAAGCATCGTTTTACAATGTGAGTGGTGTGTATACTACTGATTTCCCTGACAAGCCTCCAATCATATTCGATTTCACGGACCCCAAAATTGCTTTGGATACCAAGTATTTGTTTACGCCGCCAAAATCGACCAAGGTGAAGAAACTCAAGTTCAATTCCACCGTGGAGGTTGTGTTTCAAAATACCCAAATTATGAACGCGCAAAGCCACCCCATGCACCTTCATGGTTTTAGTTTCCATGTTTTGGCTCAAGATTTTGGGAATTTCGATTACACCAAAGATAAACACAAGTTTAATTTGGTGAACCCAATATTTCGCAACACGATTGCTGTGCCAGCGGGAGGATGGGCTGTTATCAGATTCCAAGCAAACAATCCAGGGATGTGGTTTGTGCATTGCCATGTGGATGATCATCAGCTATGGGGACTAGACATGGTTTTCGAGGTTGAAAATGGACCAACTCCTTCAACTTCTCTACCTCCACCACCTGCTGATCTACCTAAATGTTAG
Predicted protein sequences of Glyma18g41886
>Glyma18g41886.1   sequence type=predicted peptide   gene model=Glyma18g41886   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLSVFWFAWAFALLVSMASAATVEHTFIVQNKAVTRLCKERVIVTVNGLYPGPRIDVREGDAVIVHVINKSPYNITIHWHGVFQLFSAWADGPEYITQCNIRPQKSYTYKFNVIQQEGTLWWHAHSGVLRATVHGAFIIHPRSGLFPFPKPYKQVPIILGDWYDGNVVDIYQQVLLLGDVRPSAAYTINGLPGDLYNCSRNQMFKLKVRPGKTYLLRMINAAFNNNLFVKIANHSFTVVAMDASYIEPYATDIITIAPGQSADVLFKANQPIGSYYMAASPYVVGQPEVLFDTTTTRGIVVYEGYKTSSKNYSKPIVPILPHFNDTPIAHKFFSNITSLMGAPHWVPVPLEVDEHMFITININLERCPKNGTCQGVFGQKFSASMNNESFVHPVGKGYSMLEASFYNVSGVYTTDFPDKPPIIFDFTDPKIALDTKYLFTPPKSTKVKKLKFNSTVEVVFQNTQIMNAQSHPMHLHGFSFHVLAQDFGNFDYTKDKHKFNLVNPIFRNTIAVPAGGWAVIRFQANNPGMWFVHCHVDDHQLWGLDMVFEVENGPTPSTSLPPPPADLPKC*






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